Is there a truly light-independent ecosystem?

It seems impossible for life to truly escape the influence of the sun, even in the Earth's darkest, most isolated places

Oxygen is one of those things that nobody thinks about unless they either don’t have it or they’re a scientist. Either way, once you do start to think about oxygen, its usually not long until you start thinking there’s nothing more important in the universe.

I’ve been thinking a lot about oxygen lately, and not because I’m suffocating. And naturally, I have become something of an O$_2$ conspiracy theorist. It’s everywhere! It’s pulling all the strings. Heck if it weren’t for covid, I’d be grabbing random passerbys on the street and screaming at them: “WHY CAN’T YOU SEE IT!?!”

Ahem. Not really, of course. If only I was actually as enthusiastic about science as conspiracy theorists are about conspiracy theories—I’d get a lot more done. But in any case, thinking about O$_2$ does lead to some interesting questions.

Life in the darkest possible dark

It also leads to interesting places, like the deep, dark, and often bizzare “light-independent” ecosystems of this planet. Think caves, animal guts, underground, and in the deep sea—basically anywhere there’s no light to power photosynthesis. The connection between darkness and oxygen might not be immediately obvious, but take a second to think about where all that O$_2$ you’re enjoying right now comes from (probably a tree) and it might be a bit clearer where I’m going with this.

I started down this rabbit hole after watching a Youtube video by Kurzgesagt about rogue planets called “Aliens under the Ice." The video goes through research supporting the existence of liquid water oceans on terrestrial rogue planets1 and points to black smoker vents in the deep sea as an example of how life could get by on a world without a sun—in the darkest possible dark.

The idea of habitable rogues absolutely enchanted me. Just imagine—intelligent life evolving inside that would have no way of ever knowing that the universe didn’t end where the bottom of their planet’s ice sheet began. It makes you wonder what kind of fundamental limits there might be on what we’ll ever be able to see of the cosmos.

I got to enjoy about a full five minutes of that kind of blissful fantasy before my brain turned back on and gently reminded me that black smoker ecosystems (at least as we know them on Earth today) just wouldn’t work on a rogue planet.

They say science doesn’t ruin things but sometimes it really does.

Anyways, the deep-sea hydrothermal vent food chain starts with chemosynthetic bacteria instead of photosynthetic plants. Unlike plants, these bacteria don’t need light to “fix” CO$_2$ as biologically-useful organic carbon. They use chemical energy to fix carbon instead, hence the “chemo” in chemosynthesis. Vent microbes get the energy they need for chemosynthesis by reacting chemical “food” spewed out by vents with oxygen dissolved in the surrounding seawater. It’s a bit like how we get energy to live from reacting our food with the oxygen we breathe.

But that oxygen doesn’t come from nowhere. It comes from photosynthesis—photosynthesis that happens in the razor-thin layer of sunlit ocean that sits kilometers of empty, black ocean water above the vent ecosystems it indirectly sustains.

So even in the absolute darkness of the deep ocean, the complex ecosystems at hydrothermal vents still fundamentally rely on one of the products of photosynthesis.

Of course, there are microbes that can run chemosynthesis without oxygen. Chemicals like sulfate, nitrate, and oxidized iron are decent substitutes and can fill in for oxygen in certain contexts2. But—of course—the reactions that produce these things in any abundance almost always require either oxygen or light (for a different kind of photosynthesis) to proceed. Sulfate, for instance, is one of the best oxygen-alternatives and is abundant in the ocean today but probably only existed in trace quantities before the rise of oxygen.

Not so light-independent after all, then.

Turn off photosynthesis and what’s left?

Turning off photosynthesis and taking O$_2$ completely out of the picture leaves us with just about the worst alternative “breathable” imaginable—CO$_2$. There’s a reason you breath this stuff out and not in. But there are some microbes that make do with CO$_2$ anyways, reacting it with hydrogen gas to yield methane and a little bit (and it is a little bit) of energy. That energy can be used for chemosynthesis, meaning that these “autotrophic methanogens” are actually capable of existing without oxygen (or sulfate, etc.) or organic carbon produced by photosynthesis. So long as the oceans somehow remained liquid, autotrophic methanogens wouldn’t notice if someone turned off the sun.

But these guys aren’t the foundation of vent ecosystems. Reacting H$_2$ with CO$_2$ this way barely provides enough energy to be worth doing at all. It just wouldn’t be possible to sustain an amount of biomass comperable to that we see at a black smoker today if autotrophic methanogenesis were the only game in chemosynthesis town.

So, turn off photosynthesis and what do we have left at our teeming deep-sea oasis? Not much: autotrophic methanogens at the base of the food chain producing CH$_4$ and organic carbon to build their own cells, other microbes breaking down the dead leftovers of those methanogens into small organic molecules via fermentation, and another kind of methanogen (“hetertrophic”) combining CO$_2$ with those small organic molecules for energy and releasing yet more CH$_4$ in the process.

I imagine it’d look more like a slimy patch than an oasis. And if you did expose it to oxygen and light a match nearby, it would probably catch fire pretty easily thanks to all that methane.

Fun things to imagine.

Anyways, good news—autotrophic methanogenesis is actually a candidate for the “first metabolism” among scientists who think life started at alkaline hydrothermal vents (not black smokers, a different kind)3. So depending on your preferred flavor of origin-of-life hypothesis, all this oxygen doom-and-gloom doesn’t necessarily preclude life on rogue worlds.

Is there a truly light-independent ecosystem on Earth?

If black smokers—the poster-child for light-independent life on Earth—depend on photosynthesis even though they’re leagues (ha-ha ocean words) away from any noteworthy source of light, that begs the question: are there any truly light-independent ecosystems on Earth?

Perhaps I should say natural ecosystems. Of course someone could throw some microbes in a box, seal it up, put it in the dark, and say “ta-da, I’ve done it! A light-independent ecosystem!” But that’s not interesting. We already know that there are limited kinds of carbon fixation that can run without light, oxygen, or a good substitute for oxygen. I’m more interested in whether or not there are any corners of the Earth where those limited forms of carbon fixation are still the foundation of an ecosystem.

Usually when we say we’re talking about"light-independent” ecosystems, we’re really talking about ecosystems that don’t rely on photosynthesis for organic carbon. But as we’ve seen, that isn’t the whole story. Photosynthesis has more than one product. In addition to organic carbon, it produces oxygen—there are also some kinds of photosynthesis that produce substances like elemental sulfur or nitrate that can serve as “oxygen substitutes.”

So, when we ask if an ecosystem is “light-independent,” we’re really asking two questions. First, does life in this ecosystem rely on photosynthesis for organic carbon? And does it rely on photosynthesis for something else?

Most dark places aren’t really “light-independent”

Most dark places are automatically ruled out just by asking the first question. It’s dark in your small intestine (hopefully), but unless you’re eating Riftia worms dredged up fresh from a nearby hydrothermal vent for every meal, the organic carbon in there should all have ultimately derived from photosynthesis. Life in caves usually relies at least a little on input of organic carbon from the sunny outside, even if chemosynthesis helps make up the difference. Life in the deep sea and in sediments away from hydrothermal vents also relies on organic carbon that drifts down from the sunlit surface.

Many of the well-known “anaerobic” or oxygen-free places on Earth can be excluded for the same reason. Sediments and waters in oxygen-poor lakes, deep layers of soil, rice paddies, hypoxic ocean “dead zones,” sewage treatement pants, even some infected wounds are all pretty much oxygen-free and many are dark, but life there relies on organic carbon produced by photosynthesis. They’re not truly “light-independent”

Still, there are a few places where life gets by without any photosynthetic organic carbon at all. We’ve already discussed hydrothermal vents. There are also other kinds of undersea geologic systems that support chemosynthetic ecosystems, and even a handful of weird caves where the food chain is entirely based on chemosynthesis. Movile Cave in Romania is one such place—the cave is so isolated that all life there has been cut off from the outside world for over 5 million years.

These places support some truly remarkable and odd wildlife, including a host of animals that often looks more like its from a Star Trek episode than from the planet Earth. Vents support octopus, crabs, fish, shrimp, mussels, and tubeworms a meter long. And in Movile Cave, there are an array of arthropod species and fungi, and even a few leeches (makes me wonder: whose blood are they drinking?).

But all those animals should be a red flag. Where there are animals, there is at least some oxygen4. We’ve already been through the oxygen problem for hydrothermal vents. And even though the air in Movile Cave is very low in oxygen, it still contains enough for its animal inhabitants to breathe (but not enough for you).

And the winer is…

The only place I can think of that meets both criteria for true “light independence” is the oceanic crust itself. The microbes that live in seafloor sediments depend in large part on organic carbon that sinks down from the sunlit surface, but underneath that sediment is the real ocean floor: a kind of black volcanic rock called basalt. As water percolates through tiny veins in the basalt, it causes a chemical reaction called serpentinization to occur, slowly generating H$_2$. And since the seawater also contains CO$_2$, there is apparently enough chemical energy around for some very lonely autotrophic methanogens to go about their boring business down there.

Maybe there are a few other places on Earth where similar conditions exist as well, but it is hard to imagine the inhabitants looking all that different. And if you’ll remember, this is pretty much identical to the scenario I outlined earlier for what a rogue planet biosphere might look like. So if you want to see an alien, just go dredge up a rock from the deep sea and whip out a microscope.

Still, even if they’re about what I expected, I was still pretty surprised to find out about these basalt methanogens living in true isolation. It’s easy to imagine life in the dark at first, but start thinking about where the organic carbon and especially where the O$_2$ comes from and it becomes clear very quickly just how revolutionary photosynthesis has been for the Earth. The world as we experience it can only exist because a few million years ago cyanobacteria figured out photosynthesis—and even the places we think of as the most alien and remote have all been irreversibly touched by this special metabolism. In that light, it’s remarkable that there is any life at all out there that managed to make it through the oxygen revoultion without noticing, that there truly is a light-independent ecosystem on this planet.

It’s just a pretty boring one.


  1. A quick aside—the authors of the paper claiming that ice-covered oceans could exist on rogue planets absolutely nailed the name for their ocean worlds, which I’m honestly a bit disappointed Kurzgesagt didn’t pick up: Steppenwolf planets. Steppenwolf is German for “steppe wolf” and the authors imagine that—and I quote—“any life in this strange habitat would exist like a lone wolf wandering the galactic steppe.” Someone clearly thought he was a poet. Or maybe the authors were just DC comic fans. ↩︎

  2. I purposely avoided getting into the details too much in this post since they’re not necessary to get the main point. But for anyone interested, the difference between good and bad substitutes for oxygen comes down to redox (reduction-oxidation) chemistry. If you’re interested in geobiology or astrobiology, redox chemistry is an important concept to understand because it can be used to predict how much energy is available to life in a given environment. This review from Astrobiology Magazine covers the basics for anyone interested. ↩︎

  3. Again: alkaline vents. NOT black smokers! The vent origin of life people take this veeeerrrry seriously. ↩︎

  4. There is a recently discovered exception to this rule: some tiny, weird animals that live in a briny layer of water at the bottom of the Meditteranean. But as a general rule, animals need oxygen at least some of the time, even if they can get by without it for a while. ↩︎